Datasets

Please choose the PPI dataset used for finding protein complexes.

Please choose a username.
Gold Standards

Please choose the Gold Standard used for assessment of results.

Algorithms
Parameters

CFinder
k-clique size(k), Lower link weight threshold(w), upper link weight threshold(W), Maximum time of clique searching(t),


MCL
Inflation(I),


ClusterONE


RNSC
Shuffling diversification length(d), Diversification frequency(D), Number of experiments(e), Naive stopping tolerance(n), Scaled stopping tolerance(N), Tabu length(t), Tabu tolerance(T),


RRW
Restart probability(r), Overlap threshold(overlap), Early cutoff(lambda),


IMHRC
Minimum size of cluster(min-size), Maximum size of cluster(max-size), Hub retrieving threshold(black-list)(γ), Hub removing threshold (black-list)(β), Overlap threshold(max-overlap), Growing penalty(growth-penalty), Hub retrieving penalty(back-penalty), Minimum Density(min-density),


PEWCC
Overlap, Rejoin, Reliability, Method,


ProRank

Upload the input file; otherwise, the default input file will be selected automatically.


Prorank-Plus



Upload the results of one or several custom methods (press shift and select extra file)

Integration

Please choose the type of integration.


The detected clusters with overlap more than φ are considered to be similar


The clusters that are dectected by Ψ algorithms are considered for integration


Criteria

Please choose the evaluation criteria.



Filtering

Please choose the evaluation criteria.




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ch-eslahchi@sbu.ac.ir
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